Publications
Please check our publications from my google scholar page:
OmniCellAgent: Towards AI Co-Scientists for Scientific Discovery in Precision Medicine [Link]
Di Huang, Hao Li, Wenyu Li, Heming Zhang, Patricia Dickson, Ming Zhan, J Philip Miller, Carlos Cruchaga, Michael Province, Yixin Chen, Philip Payne, Fuhai Li,
2025 Click Here
mosGraphFlow: a novel integrative graph AI model mining signaling targets from multi-omic data [Link]
Heming Zhang*, Dekang Cao*, Tim Xu, Emily Chen, Guangfu Li, Yixin Chen, Philip Payne, Michael Province, Fuhai Li,
2025, BMC Methods Click Here
OmniCellTOSG: The First Cell Text-Omic Signaling Graphs Dataset for Joint LLM and GNN Modeling [Link]
Heming Zhang, Tim Xu, Dekang Cao, Shunning Liang, Guntaas Shergill, Nicholas Hadas, Lars Schimmelpfennig, Levi Kaster, Di Huang, Carlos Cruchaga, Guangfu Li, Michael Province, Yixin Chen, Philip Payne, Fuhai Li
2025, Click Here
BioMedGraphica: An All-in-One Platform for Biomedical Data Integration and Knowledge Graph Generation [Link]
Heming Zhang, Shunning Liang, Tim Xu, Wenyu Li, Di Huang, Yuhan Dong, Guangfu Li, J. Philip Miller, S. Peter Goedegebuure, Marco Sardiello, Jonathan Cooper, William Buchser, Patricia Dickson, Ryan C. Fields, Carlos Cruchaga, Yixin Chen, Michael Province, Philip Payne, Fuhai Li
2025, Click Here
M3NetFlow: A multi-scale multi-hop graph AI model for integrative multi-omic data analysis [Link]
Heming Zhang, S. Peter Goedegebuure, Li Ding, David DeNardo, Ryan C. Fields, Michael Province, Yixin Chen, Philip Payne, Fuhai Li
Iscience, 2025.